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  • Coherence_Evaluations - pma_earth.csv

    Dataset thumbnail: Coherence_Evaluations - pma_earth.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    08/10/2022
    Date Created:
    2022
    License:
    Open Data Commons Public Domain Dedication and License (PDDL)

  • Coherence_Evaluations - cas_random5k.csv

    Dataset thumbnail: Coherence_Evaluations - cas_random5k.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    08/10/2022
    Date Created:
    2022
    License:
    Open Data Commons Public Domain Dedication and License (PDDL)

  • Coherence_Evaluations - cas_environmental.csv

    Dataset thumbnail: Coherence_Evaluations - cas_environmental.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    08/10/2022
    Date Created:
    2022
    License:
    Open Data Commons Public Domain Dedication and License (PDDL)

  • Coherence_Evaluations - cas_pollution.csv

    Dataset thumbnail: Coherence_Evaluations - cas_pollution.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    08/10/2022
    Date Created:
    2022
    License:
    Open Data Commons Public Domain Dedication and License (PDDL)

  • Coherence_Evaluations - cas_climate.csv

    Dataset thumbnail: Coherence_Evaluations - cas_climate.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] / Chicago Novel Corpus [nvl] / Newspaper Corpus [nws] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    11/11/2022
    Date Created:
    2022
    License:
    Open Data Commons Attribution License (ODC-By)

  • Coherence_Evaluations - cas_earth.csv

    Dataset thumbnail: Coherence_Evaluations - cas_earth.csv
    Type:
    Dataset
    Description/Abstract:
    CSV files containing the topic coherence scoring pertaining to datasets of: DocumentCount = 5,000 Corpus = (one of) Federal Caselaw [cas] / Pubmed-Abstracts [pma] / Pubmed-Central [pmc] SearchTerm[s] = (one of) Earth / Environmental / Climate / Pollution / Random 5k documents of a specific corpus Coherence was scored across every combination of: TopicCount: 10-40 Hyperparameter-Alpha: [0.01, 0.31, 0.61, 0.91, symmetric, asymmetric] Hyperparameter-Beta: [0.01, 0.31, 0.61, 0.91, automatic, symmetric] The columns in this file include: Validation_Set: Which search term this scoring pertains to Topics: Number of topics in the model Alpha: Hyperparameter alpha selection from the 6 options above Beta: Hyperparameter beta selection from the 6 options above Coherence: The topic coherence score for the given model-row Perplexity: The perplexity score for the given model-row
    Creator/Author:
    McCabe, Erin E.
    Submitter:
    Erin E. McCabe
    Date Uploaded:
    08/10/2022
    Date Modified:
    08/10/2022
    Date Created:
    2022
    License:
    Open Data Commons Public Domain Dedication and License (PDDL)

  • COVID 19 literature NLP models – Viral outbreak topic tuning

    Dataset thumbnail: COVID 19 literature NLP models – Viral outbreak topic tuning
    Type:
    Dataset
    Description/Abstract:
    The data sets were derived from coronavirus related scientific literature using the CORD-19 dataset released by the Allen Institute of Artificial Intelligence as of July 14, 2020, using the Elasticsearch engine hosted by the Digital Scholarship Center (DSC). Through indexing the full-text and the metadata of the article corpus, the research team generated a full-corpus model and 7 different models corresponding to key viral outbreaks from the past several decades' coronaviruses (SARS-CoV, MERS-CoV, and SARS- CoV-2) and non-coronaviruses (HIV, Zika, H1N1, and Ebola). The targeted subsets of the articles used two or more occurrences of virus-specific keywords drawn from conventions established by the World Health Organization.
    Creator/Author:
    Koshoffer, Amy; Wu, Danny; Latessa, Jenny; Kannayyagar, Suraj; Luken, Sally; McCabe, Erin; Edgerton, Ezra; Washington, Dorcas; Lee, James; Powers, Margaret, and Hagedorn, Philip
    Submitter:
    Amy Koshoffer
    Date Uploaded:
    10/30/2020
    Date Modified:
    11/05/2020
    Date Created:
    2020-07
    License:
    CC0 1.0 Universal

  • COVID 19 literature NLP models – Viral outbreak models formatted

    Dataset thumbnail: COVID 19 literature NLP models – Viral outbreak models formatted
    Type:
    Dataset
    Description/Abstract:
    The data sets were derived from coronavirus related scientific literature using the CORD-19 dataset released by the Allen Institute of Artificial Intelligence as of July 14, 2020, using the Elasticsearch engine hosted by the Digital Scholarship Center (DSC). Through indexing the full-text and the metadata of the article corpus, the research team generated a full-corpus model and 7 different models corresponding to key viral outbreaks from the past several decades' coronaviruses (SARS-CoV, MERS-CoV, and SARS- CoV-2) and non-coronaviruses (HIV, Zika, H1N1, and Ebola). The targeted subsets of the articles used two or more occurrences of virus-specific keywords drawn from conventions established by the World Health Organization.
    Creator/Author:
    Koshoffer, Amy; Hagedorn, Philip ; Latessa, Jenny; Lee, James; Power, Margaret; Luken, Sally; McCabe, Erin; Wu. Danny; Washington, Dorcas; Kannayyagar, Suraj, and Edgerton, Ezra
    Submitter:
    Amy Koshoffer
    Date Uploaded:
    10/29/2020
    Date Modified:
    11/05/2020
    Date Created:
    2020-07
    License:
    CC0 1.0 Universal

  • COVID 19 literature NLP models - Viral outbreak model centrality files

    Dataset thumbnail: COVID 19 literature NLP models - Viral outbreak model centrality files
    Type:
    Dataset
    Description/Abstract:
    The data sets were derived from coronavirus related scientific literature using the CORD-19 dataset released by the Allen Institute of Artificial Intelligence as of July 14, 2020, using the Elasticsearch engine hosted by the Digital Scholarship Center (DSC). Through indexing the full-text and the metadata of the article corpus, the research team generated a full-corpus model and 7 different models corresponding to key viral outbreaks from the past several decades' coronaviruses (SARS-CoV, MERS-CoV, and SARS- CoV-2) and non-coronaviruses (HIV, Zika, H1N1, and Ebola). The targeted subsets of the articles used two or more occurrences of virus-specific keywords drawn from conventions established by the World Health Organization.
    Creator/Author:
    Koshoffer, Amy; Wu, Danny; Latessa, Jenny; Lee, James; Luken, Sally; McCabe, Erin; Edgerton, Ezra; Washington, Dorcas; Kannayyagar, Suraj, and Powers, Margaret
    Submitter:
    Amy Koshoffer
    Date Uploaded:
    10/29/2020
    Date Modified:
    11/05/2020
    Date Created:
    2020-07
    License:
    CC0 1.0 Universal